PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 458aa    MW: 51921.6 Da    PI: 6.4746
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023110.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.22e-115564561373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaal.............. 81 
                  l++lL++cAe +s+ d+  a++l++ ls ++sp gd+++Rl++yf++AL+ rl+     ++++   +++ +t+ + s+++                  
  Pbr023110.1  56 LRHLLITCAELISHLDFPSANRLISLLSSNSSPFGDSTERLTHYFVKALSYRLNInanYSPTTIGPMTALTTAASASASSS--Snylfppmlleeedd 151
                  68**************************************************98721233344444444444433333333..245899999999999 PP

         GRAS  82 .........klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetger 164
                            ++++++P+++fshltaNqaIle+++++   +Hi+Dfdi++G+QWp+L+qaL +R+     ++pp+lRiT+ g+    + + l +tger
  Pbr023110.1 152 neetlhscyLTLNQITPFIRFSHLTANQAILESIDSShLSIHILDFDIMHGVQWPPLMQALVERSynsplHPPPTLRITATGR----DLTLLLRTGER 245
                  99999886556************************996789************************87777779**********....9********** PP

         GRAS 165 LakfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                  L +fA++lg+ f+f++l    +a+  + +++++L ++++EalaVn+vl lh+l+ ++         +L+ +ksl+Pkv++v+++ea+hn++ F++rf+
  Pbr023110.1 246 LFRFAQSLGLAFQFHPLvlnnAARPSDLISPSTLGLHQNEALAVNCVLYLHTLVTDDSRD---LLLFLQKIKSLNPKVFTVANKEANHNNPLFFNRFV 340
                  *****************665445567889************************9444433...458******************************** PP

         GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek.WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee 354
                  eal++y a+f+slea+lp++s+er  vE+  +gre+++vv  eg++r++rhe++e+ W+  l++aGF++v+ls +a +qaklllr ++ s+gy++   
  Pbr023110.1 341 EALDHYGAVFESLEATLPPNSRERLAVEEW-FGREVKDVVGVEGEKRKQRHERYETfWEVVLRRAGFENVALSPFALSQAKLLLRLHYpSEGYQLRIL 437
                  ****************************97.***********************977***************************************** PP

         GRAS 355 sgslvlgWkdrpLvsvSaW 373
                  ++s++lgW++rpL+svS+W
  Pbr023110.1 438 NDSFFLGWQNRPLFSVSSW 456
                  ******************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.78930436IPR005202Transcription factor GRAS
PfamPF035146.9E-11356456IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MGSFNSSHIQ QEEKEDHQNH PNNNNISDLQ LYHHHHVSDQ PSLIMSTSPD ISQTHLRHLL  60
ITCAELISHL DFPSANRLIS LLSSNSSPFG DSTERLTHYF VKALSYRLNI NANYSPTTIG  120
PMTALTTAAS ASASSSSNYL FPPMLLEEED DNEETLHSCY LTLNQITPFI RFSHLTANQA  180
ILESIDSSHL SIHILDFDIM HGVQWPPLMQ ALVERSYNSP LHPPPTLRIT ATGRDLTLLL  240
RTGERLFRFA QSLGLAFQFH PLVLNNAARP SDLISPSTLG LHQNEALAVN CVLYLHTLVT  300
DDSRDLLLFL QKIKSLNPKV FTVANKEANH NNPLFFNRFV EALDHYGAVF ESLEATLPPN  360
SRERLAVEEW FGREVKDVVG VEGEKRKQRH ERYETFWEVV LRRAGFENVA LSPFALSQAK  420
LLLRLHYPSE GYQLRILNDS FFLGWQNRPL FSVSSWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-57604578375GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC3079590.0KC307959.1 Malus x domestica lateral suppressor protein (LAS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009379077.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-132SCL18_ARATH; Scarecrow-like protein 18
TrEMBLM4PMF00.0M4PMF0_MALDO; Lateral suppressor protein
STRINGPOPTR_0012s02710.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129262133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-101GRAS family protein